Breedbase

Breedbase is a web-based, comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. Breedbase supports the Breeding Application Programming Interface (BrAPI) standard which defines data objects and methods for exchanging breeding data. The Breedbase system has evolved from the Sol Genomics Network (SGN) and Cassavabase and related sites (see RTBbase.org ). There are a number of instances running for diverse crops, including Cassava (https://cassavabase.org, sweet potato ( https://sweetpotatobase.org ), banana ( https://musabase.org ), rice ( https://ricebase.org ), tomato and other Solanaceae ( https://solgenomics.net/ ) and many others. The Breedbase manual provides detailed information about available features. Resources in this dataset: - Resource Title: Website Pointer for Breedbase. File Name: Web Page, url: https://breedbase.org/ Search utilities: Wizard; Accessions and Plots; Organisms; Progenies and Crosses; Field Trials; Genotyping Plates; Genotyping Data Projects; Genotyping Protocols; Traits; Images; People; FAQ. Manage utilities: User Roles; Breeding Programs; Locations; Accessions; Seed Lots; Crosses; Field Trials; Genotyping Trials; Field Book App; Phenotyping; Barcodes; Label Designer; Download; Upload; ODK Data Collection. Analyze utilities: Breeder Tools -- Selection Index; Genomic Selection; Population Structure; Accession Usage; Compare Trials; Graphical Filtering Sequence Analysis -- BLAST; VIGS Tool; HapMap Jbrowse Other -- Ontology Browser; Compose a New Trait.